PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf02501g00002.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family M-type_MADS
Protein Properties Length: 206aa    MW: 23042.3 Da    PI: 6.2742
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf02501g00002.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF34.13.5e-11641540
                              SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE CS
                    SRF-TF  5 nksnrqvtfskRrngilKKAeELSvLCdaevaviif 40
                              +k  r   ++  +n++ KKA E+S+LC++e+a+iif
  Peinf101Scf02501g00002.1  6 DKHSRDAALTHMQNTLCKKAMEISILCGIEIAIIIF 41
                              5677888899999*********************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006611.605154IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.31E-12269IPR002100Transcription factor, MADS-box
PfamPF003193.4E-8641IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
MRLTRDKHSR DAALTHMQNT LCKKAMEISI LCGIEIAIII FRLGDPPVLY GNPDVESVVN  60
KFLKAQLTKC LSCRCMLCER ASCREERCKM VKKGKELQDN DENQNHVDGW FKRFTTKNFE  120
AADLGRVEQL NEKIDKLSKY LDNEIVLLQS AIGTDDPKSA EGINVTGSKD PKSDEGMNVI  180
GSENPRSVSE MSDASSSTIS PNWLSL
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA22971258
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34440.17e-11AGAMOUS-like 29